It's really not that difficult or mystical. Firing from the CST does exactly the same thing as firing from the CC hotshoe. The CC sets up the lights and tells them whether or not to fire. Firing from either the CC hotshoe or CST hot shoe fire whatever lights are enabled to fire by the CC. It's a what you see is what you get situation.
In normal use, you should have the CC channel selector set to any channel from one to sixteen, the power settings for each light will be displayed in bar graph form and, assuming you are using the modeling lamps, the lamps will visually show you which lights are enabled to fire as well as the relative brightness of each enabled light. The CST will honor all these settings.
Same thing happens with groups. If you have the CC set on a group rather than on a particular channel, only those light contained in that group are enabled to fire, either from the CST or CC hotshoe connection. The CC display and the modeling lamps will show you which lights are enabled within that group, and firing from either the CC or CST hotshoe will fire only those lights contained in that group.
Again, whatever you have set up in the CC will fire from either the CC or CST . . . WYSIWYG.
The test and meter buttons of the CC are different than the CC hotshoe connection. These buttons will fire only the channel or group the CC is set to. This allows you to selectively test or meter one light at a time, or one group.
Let's say the CC is set to channel three and you press the CC Test or Meter buttons. Only the light on channel three will fire. If you want to fire or meter all lights from the CC you must select "ALL" on the CC before you press the test or meter button. But you can avoid having to set the CC to ALL by simply pressing the test button on the CST. This is one of the advantages of using the CST on the camera and handholding the CC.
While it may sound confusing to some, it is logical and all explained in the manual. The CC is enormously powerful in function, and I don't know of an easier operating protocol short of putting a dozen buttons on it or eliminating the selective firing and metering capabilities.
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